Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs4304110 chr5:1798312 A/G 3.26E-6 134 42.27 48.4 18.4 KM Plot
TGCT rs432072 chr17:39339464 G/C 7.11E-7 133 13.17 46.03 42.1 KM Plot
TGCT rs4346064 chr12:107081599 C/A 5.59E-5 133 44.52 45.1 28.67 KM Plot
TGCT rs4380439 chr3:172439294 G/A 8.37E-5 134 25.33 37.42 45.83 KM Plot
TGCT rs4385986 chr12:107133775 C/T 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs4433659 chr12:107082496 G/T 5.59E-5 133 44.52 45.1 28.67 KM Plot
TGCT rs4442955 chr2:109319675 G/A 0.000116 130 25.77 60.73 37.95 KM Plot
TGCT rs4454232 chr7:127775728 G/A 8.19E-6 134 42.27 42.15 17.1 KM Plot
TGCT rs4472340 chr6:42580755 C/T 3.23E-8 132 37.7 50.8 20.6 KM Plot
TGCT rs447375 chr17:39338970 G/A 7.11E-7 133 13.17 46.03 42.1 KM Plot
TGCT rs448700 chr17:39339386 T/A 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs449817 chr17:39341266 A/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs4499930 chr6:42527706 T/C 1.86E-10 131 18.07 49.93 38.2 KM Plot
TGCT rs451222 chr17:39341648 A/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs4514874 chr2:86182648 A/G 1.19E-6 134 17.28 42.27 45.1 KM Plot